91 publications | H-index 35 | i10-index 61 | citations 3,628
ORCiD - ResearchGate - loop - publons - dimensions
*indicates joint authorship
Zang X, Pascoe B, Tang H, Ding W, Monteith W, Parker CT, Yang T, Jiao X, Huang J*, Sheppard SK* (2024)
Pre-evolved human pathogenicity among mammal adapted Campylobacter
Research Square preprint doi: TBC
Post V*, Pascoe B*, Mourkas E, Calland JK, Hitchings MD, Erichsen C, Fischer J, Morgenstern M, Richards RG, Sheppard SK**, Moriarty TF** (2024)
Microbial Genomics (Accepted); medRxiv doi: 10.1101/2022.10.21.22280349
Garcias B, Monteith W, Vidal A, Aguirre L, Pascoe B, Mourkas E, Sheppard SK, Martin M, Darwich L (2024)
Plasmid and Chromosomal Locations of Antibiotic, Biocide and Heavy Metal Resistance Genes in Escherichia coli isolates from Pigs in Catalonia (Spain)
Microbial Genomics (Accepted)
Schiaffino F*, Colston JM*, Paredes Olortegui M, Penataro Yori P, Mourkas E, Pascoe B, Lima AAM, Mason CJ, Ahmed T, Kang G, Mduma E, Samie A, Zaidi A, Liu J, Cooper KK, Houpt E, Parker CT, Lee GO, Kosek MN (2024)
The Lancet Discovery Science [eClinicalMedicine] 76: 102841
Pascoe B, Futcher G, Pensar J, Bayliss SC, Mourkas E, Calland JK, Hitchings MD, Joseph LA, Lane CG, Greenlee T, Arning N, Wilson D, Jolley KA, Corander J, Maiden MCJ, Parker CT, Cooper KK, Rose EB, Bruce BB, Sheppard SK* (2024)
Journal of Infection 89(5): 106265; doi: 10.1016/j.jinf.2024.106265; SSRN preprint doi: 10.2139/ssrn.4671846
Prasertsee T, Prachantasena S, Tantitaveewattana P, Chuaythammakit P, Pascoe B*, Patchanee P* (2024)
Assessing antimicrobial resistance profiles of Salmonella enterica in the pork production system
Journal of Medical Microbiology 73 (9): 001894; doi: 10.1099/jmm.0.001894
Mourkas E, Valbenito JO, Marsh H, Hitchings MD, Cooper KK, Parker CT, Székely T, Johansson H, Ellström P, Pascoe B, Waldenström J, Sheppard SK (2024)
Current Biology 17 3955-3965; bioRxiv doi: 10.1101/2023.07.11.548564 [Linked opinion piece]
Garcias B, Flores MA, Fernández M, Monteith W, Pascoe B, Sheppard SK, Martín M, Cortey M, Darwich L (2024)
Antibiotics 13(8): 759
Vale FF, HpGP Research Network, Roberts RJ, Kobayashi I, Camargo MC, Rabkin CS (2024) [Consortium member]
Gut Microbes 16: 2379440
Shamanna V, Srinivas S, Couto N*, Nagaraj G, Sajankila SP, Krishnappa HG, Kumar KA, Aanensen DM, Lingegowda RK* and the NIHR Global Health Research Unit consortium (2024) [consortium member]
Microbial Genomics 10(7): 001271; bioRxiv doi: 10.1101/2024.03.15.585133
Calland JK, Pesonen ME, Mehat J, Pascoe B, Haydon DJ, Lourenco J, Lukasiewicz B, Mourkas E, Hitchings MD, La Ragione R, Hammond P, Wallis T, Corander J*, Sheppard SK* (2024)
Genomic tailoring of autogenous poultry vaccines to reduce Campylobacter from farm to fork
npj Vaccines 9(1): 105; bioRxiv doi: 10.1101/2023.11.09.566360
Taylor AJ, Yahara K, Pascoe B, Ko S, Mageiros L, Mourkas E, Calland JK, Puranen S, Hitchings MD, Jolley KA, Kobras CM, Bayliss SC, Williams NJ, van Vliet AHM, Parkhill J, Maiden MCJ, Corander J, Hurst LD, Falush D, Keim P, Didelot X, Kelly DJ*, Sheppard SK* (2024)
Epistasis, core-genome disharmony, and adaptation in recombining bacteria
mBio 15(6): e00581-24, doi: 10.1128/mbio.00581-24; bioRxiv doi: 10.1101/2021.03.15.435406
Schiaffino F, Parker CT, Garcia Bardales PF, Huynh S, Manzanares Villanueva K, Mourkas E, Pascoe B, Peñataro Yori P, Paredes Olortegui M, Cooper KK, Kosek MN (2024)
PLoS Neglected Tropical Diseases 18(3): e0012018
Schiaffino F, Parker CT, Paredes-Olortegu M, Pascoe B, Manzanares-Villanueva K, Garcia-Bardales PF, Mourkas E, Huynh S, Peñataro-Yori P, Romaina-Cachique L, Gray HK, Salvatierra G, Silva-Delgado H, Sheppard SK, Cooper KK* & Kosek MN* (2024)
Genomic resistant determinants of multidrug resistant Campylobacter spp. isolates in Peru
Journal of Global Antimicrobial Resistance 36: 309-318
Eiamsam-ang T, Tadee Pa, Buddhasiri S, Chuammitri P, Kittiwan N, Pascoe B*, Patchanee P* (2024)
Commercial farmed swine harbour a variety of pathogenic bacteria and antimicrobial resistance genes
Journal of Medical Microbiology 73 (1):1787; bioRxiv doi: 10.1101/2023.07.03.547425
Elsayed SW, Elghaish RA, Saif NA, Mouftah SF, Badr E, Naga IS, Shata AH, Pascoe B, Sheppard SK, Elhadidy M (2023)
Annals of Clinical Microbiology and Antimicrobials 22: 109
Thorell K*, Muñoz-Ramírez ZM*, Wang D, Sandoval-Motta S, Agostini RB, Ghirotto S, Torres RC, HpGP Research Network, Falush D, Camargo MC, Rabkin CS (2023) [consortium member]
Nature Communications 14: 8184
Abrudan MI, Shamanna V, Prasanna A, Underwood A, Argimón S, Nagaraj G, Di Gregorio S, Govindan V, Vasanth A, Dharmavaram S, Kekre M, Aanensen DM, Ravikumar KL the NIHR Global Health Research Unit consortium. (2023) [consortium member]
Novel multidrug-resistant sublineages of Staphylococcus aureus clonal complex 22 discovered in India
mSphere 8(5): e00185-23
Zang X, Pascoe B, Mourkas E, Kong K, Jiao X, Sheppard SK and Huang J (2023)
Evidence of potential Campylobacter jejuni zooanthroponosis in captive macaque populations
Microbial Genomics 9 (10): 001121
Monteith W*, Pascoe B*, Mourkas E, Clark J, Hakim M, Hitchings MD, McCarthy N, Yahara K, Asakura H, Sheppard SK (2023)
Contrasting genes conferring short and long-term biofilm adaptation in Listeria
Microbial Genomics 9 (10): 001114; bioRxiv doi: 10.1101/2023.06.22.546149
Woodall CA*, Hammond A*, Cleary DW, Preston A, Muir P, Pascoe B, Sheppard SK, Hay AD (2023)
Heliyon 9 (8): e18610 doi: 10.1016/j.heliyon.2023.e18610 medRxiv doi: 10.1101/2021.12.21.21268189
Buawiratlert T, Tadee Pa, Chotinun S, Chuammitri P, Kheowsri S, Suddee W, Kittiwan N, Eiamsam-ang T, Pascoe B, Patchanee P (2023)
Veterinary Integrative Sciences 21 (3) doi: 10.12982/VIS.2023.057
Prasertsee T, Pascoe B*, Patchanee P* (2023)
bioRxiv doi: 10.1101/2023.01.31.526471
Kittiwan N, Calland JK, Mourkas E, Hitchings MD, Murray S, Tadee Ph, Tadee Pa, Duangsonk K, Méric G, Sheppard SK, Patchanee P*, Pascoe B* (2022)
Microbial Genomics doi: 10.1099/mgen.0.000882; bioRxiv doi: 10.1101/2021.06.17.447897
Thorpe HA*, Tourrette E*, Yahara K*, Vale FF, Liu S, Oleastro M, Alarcon T, Perets TT, Latifi-Navid S, Yamaoka Y, Martinez-Gonzalez B, Karayiannis I, Karamitros T, Sgouras DN, Elamin W, Pascoe B, Sheppard SK, Ronkainen J, Aro P, Engstrand L, Agreus L, Suerbaum S, Thorell K, Falush D (2022)
Nature Communications 13 (1), 1-11
Tucker K, Mageiros L, Carstens A, Bröcker L, Archer E, Smith K, Mourkas E, Pascoe B, Nel D, Meric G, Sheppard SK, Kasprzyk-Hordern B, Botes M, Feil EJ, Wolfaardt G (2022)
Microbiology Spectrum 10 (5), e02473-22
Mouftah SF*, Pascoe B*, Calland JK, Mourkas E, Tonkin N, Lefevré C, Deuker D, Smith S, Wickenden H, Hitchings MD, Sheppard SK, Elhadidy M (2022)
Microbial Genomics 8(6):834; doi: 10.1099/mgen.0.000834; bioRxiv doi: 10.1101/2021.09.24.461243
Eiamsam-Ang T, Tadee Pa, Pascoe B*, Patchanee P* (2022)
Genome-based analysis of infrequent Salmonella serotypes through the Thai pork production chain
Frontiers in Microbiology 3283
White H, Vos M, Sheppard SK, Pascoe B, Raymond B (2022)
Molecular Ecology (13):3584-3597; doi: 10.1111/mec.16490
Elder FCT, Pascoe B, Wells S, Sheppard SK, Snape J, Gaze WH, Feil EJ, Kasprzyk-Hordern B (2022) Stereospecific metabolism of chloramphenicol by bacteria isolated wastewater, and the importance of stereochemistry in environmental risk assessments for antibiotics
Water Research 217:118415; doi: 10.1016/j.watres.2022.118415
Kittiwan N, Tadee Pa, Tadee Ph, Buawiratlert T, Eiamsam-ang T, Boonma O, Rojanasthien S, Pascoe B, Patchanee P (2022)
Identification of Streptococcus suis carriage in healthy pigs in Chiang Mai, Thailand
Veterinary Integrative Sciences 20 (2), 363-376
Mourkas E, Yahara K, Bayliss SC, Calland JK, Johansson H, Mageiros L, Muñoz-Ramirez ZY, Futcher G, Méric G, Hitchings MD, Sandoval-Motta S, Torres J, Jolley KA, Maidem MCJ, Ellström P, Waldenström J, Pascoe B & Sheppard SK* (2022)
Host ecology regulates interspecies recombination in bacteria of the genus Campylobacter
eLife 11:e73552
Post V*, Pascoe B*, Mourkas E, Calland JK, Hitchings MD, Erichsen C, Fischer J, Morgenstern M, Richards RG, Sheppard SK**, Moriarty TF** (2022)
medRxiv doi: 10.1101/2022.10.21.22280349
Calland JK, Pascoe B, Bayliss SC, Mourkas E, Thorpe HA, Berthenet E, Hitchings MD, Feil EJ, Corander J, Blaser MJ, Falush D* & Sheppard SK* (2021)
Quantifying bacterial evolution in the wild: a birthday problem for Campylobacter lineages
PLoS Genetics 17(9): e1009829 bioRxiv doi: 10.1101/2020.12.02.407999
Peters S*, Pascoe B*, Wu Z, Bayliss SC, Zeng X, Edogawa S, Edwinson A, Veerabadhran-Gurunathan S, Jawahir S, Calland JK, Mourkas E, Patel R, Wiens T, Decur M, Boxrud D, Smith K, Parker CT, Farrugia G, Zhang Q, Sheppard SK**, Grover M** (2021)
Campylobacter jejuni genotypes associated with post infection irritable bowel syndrome in humans
Communications Biology 4: 1015
Patchanee P, Chokesajjawatee N, Santiyanount P, Chuammitri P, Deeudom M, Monteith W, Sheppard SK, Pascoe B*, Prasertee T* (2021)
IJFM doi: 10.1016/j.ijfoodmicro.2021.109314; bioRxiv doi: 10.1101/2020.12.08.415869
Hwang W, Yong JH, Min KB, Lee K, Pascoe B, Sheppard SK, Yoon SS (2021)
PLoS Pathogens 17(6):e1009681; bioRxiv doi.org: 10.1101/2020.12.02.407528
Mäklin, T, Kallonen T, David S, Boinett CJ, Pascoe B, Méric G, Aanensen DM, Feil EJ, Baker S, Parkhill J, Sheppard SK, Corander J, Honkela A. (2021)
High-resolution sweep metagenomics using fast probabilistic inference
Wellcome Open Research 5:14; doi: 10.12688/wellcomeopenres.15639.1; bioRxiv doi: 10.1101/332544
Mageiros L*, Méric G*, Bayliss SC, Pensar J, Pascoe B, Mourkas E, Calland JK, Yahara K, Murray S, Wilkinson TS, Williams LK, Hitchings MD, Kemmett K, Feil EJ, Jolley KA, Williams NJ, Corander J, Sheppard SK. (2021)
Genome evolution and emergence of pathogenicity in Avian Escherichia coli
Nature Communications 12 (1): 765; doi: 10.1038/s41467-021-20988-w
Elder FCT, Feil EJ, Pascoe B, Sheppard SK, Snape J, Gaze WH, Kasprzyk-Horden (2021)
Frontiers in Microbiology doi: 10.3389/fmicb.2021.562157
Tadee Pa, Patchanee P, Pascoe B, Sheppard SK, Meunsene D, Tadee Ph (2021)
The Thai Journal of Veterinary Medicine 51(2): 311-319; bioRxiv doi: 10.1101/2020.12.16.419408
Mouftah S*, Cobo-Diaz JF*, Álvarez-Ordóñez A, Mousa A, Calland JK, Pascoe B, Sheppard SK & Elhadidy M. (2021)
Food Microbiology 95:103706; doi: 10.1016/j.fm.2020.103706
Meunsene D, Eiamsam-Ang T, Patchanee P, Pascoe B, Tadee Ph, Tadee Pa (2021)
PeerJ 9, e11255
Taylor AJ, Yahara K, Pascoe B, Mageiros L, Mourkas E, Calland JK, Puranen S, Hitchings MD, Jolley KA, Kobras CM, Bayliss SC, Williams NJ, van Vliet AHM, Parkhill J, Maiden MCJ, Corander J, Hurst LD, Falush D, Keim P, Didelot X, Kelly DJ*, Sheppard SK* (2021)
Cross-species evolutionary rewiring in the enteric bacterium Campylobacter
bioRxiv doi: 10.1101/2021.03.15.435406
Jehanne Q, Pascoe B, Bénéjat L, Ducournau A, Buissonnière A, Mourkas E, Mégraud F, Bessède E, Sheppard SK & Lehours P. (2020)
Applied Environmental Microbiology doi: 10.1128/AEM.01787-20
Muñoz-Ramirez ZY, Pascoe B, Mendez-Tenorio A, Mourkas E, Sandoval-Motta S, Perez-Perez G, Morgan DR, Dominguez RL, Ortiz-Princz D, Cavazza ME, Rocha G, Queiroz DMM, Catalano M, de la Palma GZ, Goldman CG, Venegas A, Alarcon T, Oleastro M, Vale FF, Goodman KJ, Torres RC, Berthenet B, Hitchings MD, Blaser MJ, Sheppard SK, Thorell K* & Torres J* (2020)
ISME doi: 10.1038/s41396-020-00758-0 Nature Reviews in Microbiology [Comment]
Pascoe B, Schiaffino F, Murray S, Méric G, Bayliss SC, Hitchings MD, Mourkas E, Calland JK, Burga R, Peñataro-Yori P, Jolley KA, Cooper KK, Parker CT, Paredes-Olortegui M, Kosek M & Sheppard SK. (2020)
PloS NTD 14(8):e0008533; doi: 10.1371/journal.pntd.0008533; medRxiv doi: 10.1101/2020.04.26.20075689
Mourkas E, Taylor AJ, Méric G, Bayliss SC, Pascoe B, Mageiros L, Calland JK, Hitchings MD, Ridley A, Vidal A, Forbes KJ, Strachan NJC, Parker CT, Parkhill J, Jolley KA, Cody AJ, Maiden MCJ, Kelly DJ*, Sheppard SK* (2020)
PNAS 117 (20) 11018-11028; doi: 10.1073/pnas.1917168117
Patchanee P, Tanamai P, Tadee Ph, Hitchings MD, Calland JK, Sheppard SK, Meunsene D, Pascoe B* & Tadee Pa* (2020)
PeerJ 8:e9700; doi:10.7717/peerj.9700
Nguyen LTT, Nguyen KNT, Le PNTA, Cafini F, Pascoe B, Sheppard SK, Nguyen TB, Hoang TPN, Nguyen TV, Pham TTK, Morikawa K, Nguyen DQ, Duong HX. (2020)
The emergence of plasmid-borne, cfr-mediated linezolid resistant-staphylococci in Vietnam
Journal of Global Antimicrobial Resistance 22: 462-465; doi: 10.1016/j.jgar.2020.04.008
Banaszkiewicz S, Calland JK, Mourkas E, Sheppard SK, Pascoe B & Bania J. (2019)
Genetic diversity of composite enterotoxigenic Staphylococcus epidermidis pathogenicity islands
Genome Biology and Evolution 11 (12) 3498–3509; doi.org/10.1093/gbe/evz259
Mourkas E*, Florez-Cuadrado D*, Pascoe B, Calland JK, Bayliss SC, Mageiros L, Méric G, Hitchings MD, Quesada A, Porrero C, Ugarte-Ruiz M, Gutierrez-Fernandez J, Dominguez L, Sheppard SK. (2019)
Environmental Microbiology 21 (12) 4597-4613; doi:10.1111/1462-2920.14760
Bliss L, Pascoe B, Sheppard SK. (2019)
Hermes: an ensemble machine learning architecture for protein secondary structure prediction
bioRxiv doi: 10.1101/640656
Pascoe B*, Williams LK*, Calland JK, Méric, G, Hitchings MD, Dyer M, Ryder J, Shaw S, Lopes BS, Chintoan-Uta C, Allan E, Vidal A, Fearnley C, Everest P, Pachebat JA, Cogan TA, Stevens MP, Humphrey TJ, Wilkinson TS, Cody AJ, Colles FM, Jolley KA, Maiden MCJ, Strachan N, Pearson BM, Linton D, Wren BW, Parkhill J, Kelly DJ, van Vliet AHM, Forbes KJ, Sheppard SK. (2019)
Domestication of Campylobacter jejuni NCTC 11168
Microbial Genomics 10.1099/mgen.0.000279; bioRxiv doi: 10.1101/591701
Prasertsee T, Chuammitri P, Deeudom M, Chokesajjawatee N, Santiyanont P, Tadee Pa, Nuangmek A, Tadee Ph, Sheppard SK, Pascoe B*, Patchanee P.* (2019)
IJFM doi: 10.1016/j.ijfoodmicro.2019.05.022
Royden A, Ormandy E, Pinchbeck G, Pascoe B, Hitchings MD, Sheppard SK, Williams NJ. (2019)
Veterinary Record Open 6: e000307; doi: 10.1136/vetreco-2018-000307
Méric, G.*, Mageiros, M.*, Pensar, J., Laabei, M., Yahara, K., Pascoe, B., Kittiwan, Tadee Ph., N., Lamble, S., Bowden, R., Jolley, KA., Maiden, MCJ., Feil, EJ., Didelot, X., Miragaia, M., de Lencastre, H., Rohde, H., Massey, R., Mack, D., Corander, J. & Sheppard, SK. (2018)
Nature Communications 9:5034; doi: 10.1038/s41467-018-07368-7
Dunn, S., Pascoe, B., Turton J, Fleming V, Diggle M, Sheppard, SK., Manning, G. & McNally, A. (2018)
Genomic Epidemiology of clinical Campylobacter spp. at a single health trust site
Microbial Genomics 4; doi: 10.1099/mgen.0.000227
Berthenet, E., Yahara, K., Thorell, K., Pascoe, B., Méric, G., Mikhail, JM., Engstrand, L., Enroth, H.,Burette, A., Mégraud, F., Varon, C., Atherton, J., Smith, S., Wilkinson, TS., Hitchings, MD., Falush, D. & Sheppard, SK. (2018)
Predicting gastric cancer risk: small Helicobacter pylori genome-wide association study shows promise
BMC Biology 16:84
Bayliss, SC., Verner-Jeffries D, Ryder D, Suarez R, Ramirez R, Romero J, Pascoe B, Sheppard SK, Godoy M, Feil EJ. (2018)
Genomic epidemiology of the commercially important pathogen Renibacterium salmoninarum within the Chilean salmon industry
Microbial Genomics doi:10.1099/mgen.0.000201
Yokoyama, M., Stevens, E., Laabei, M., Bacon L., Heesom K., Bayliss, S., Ooi, N., O’Neill, A., Murray, E., Williams, P., Lubben, A., Reeksting, S., Méric, G., Pascoe, B., Sheppard, SK., Recker, M., Hurst, L. & Massey, RC. (2018)
Hidden antibiotic resistance fitness costs revealed by GWAS-based epistasis analysis
Genome Biology 19:94 doi: 10.1186/s13059-018-1469-2 [BioRxiv: doi.org/10.1101/148825]
Tadee, Pa., Boonkhot, P., Hitchings, MD., Pascoe, B., Sheppard, SK. & Patchane, P. (2018)
Whole genome Multilocus Sequence Typing (wgMLST) and acquired antimicrobials resistance genes of pan-susceptible Salmonella Weltevreden from Thai pork production processes
Microbiology and Biotechnology Letters 46(2): 162-170
Atterby, C., Mourkas, E., Méric, G., Pascoe, B., Wang, H., Waldenström, J., Sheppard, SK., Olsen, B., Järhult, J. & Ellström, P. (2018)
The potential of isolation source to predict colonisation in avian hosts: A case study in Campylobacter jejuni strains from three bird species
Frontiers in Microbiology 9:591 doi: 10.3389/fmicb.2018.00591
Méric, G., Mageiros, M., Pascoe, B., Woodcock D., Mourkas, E., Lamble, S., Bowden, R., Jolley, KA., Raymond, B. & Sheppard, SK. (2018)
Lineage-specific plasmid acquisition and the evolution of specialized pathogens in Bacillus thuringiensis and the Bacillus cereus group
Molecular Ecology 27(7): 1524-1540 doi: 10.1111/mec.14546
Méric, G., McNally, A., Pessia, A., Mourkas, E., Pascoe, B., Mageiros, M., Vehkala, M., Corander, J. & Sheppard, SK. (2018)
Convergent amino acid signatures in paraphyletic Campylobacter jejuni sub-populations suggest human niche tropism
Genome Biology & Evolution 10 (3): 763-774; doi:10.1093/gbe/evy026
Kirk, KF., Méric, G., Nielsen, HL., Pascoe, B., Sheppard, SK., Thorlacius-Ussing, O. & Nielsen, H. (2018)
Molecular epidemiology and comparative genomics and typing of Campylobacter concisus strains from saliva, faeces and gut mucosal biopsies in inflammatory bowel disease
Scientific Reports 8:1902; doi:10.1038/s41598-018-20135-4
Rossi, GAM., Silva, HO., Aguilar, CEG., Rochetti, A., Pascoe, B., Méric, G., Mourkas, E., Hitchings, MD., Mathias., LA., de Azevedo-Ruiz, VL., Fukumasu, H., Sheppard, SK. & Vidal, AMC. (2018)
Comparative genomic survey of Bacillus cereus sensu stricto isolates from the dairy production chain in Brazil
FEMS Microbiology Letters 365(3); doi: 10.1093/femsle/fnx283
Post, V., Morgenstern, M., Harris, LG., Mageiros, L., Hitchings, MD., Méric, G., Pascoe, B., Sheppard, SK., Richards, GR., Moriarty, TF. (2017)
Phenotypic and genotypic characterisation of Staphylococcus epidermidis from orthopaedic device-related infections correlated with patient outcome
Orthopaedic Proceedings 99-B (22): 65
Florez-Cuadrado, D., Ugarte-Ruiz, M., Méric, G., Quesada, A., Concepción Porrero, M., Pascoe, B., Sáez-Llorente, JL., Orozco, GL., Domínguez, L. & Sheppard, SK. (2017)
Genome comparison of erythromycin resistant Campylobacter from turkey identifies hosts and pathways for horizontal spread of erm(B) genes
Frontiers in Microbiology 8: 2240; DOI: 10.3389/fmicb.2017.02240
Post, V., Harris, LG., Morgenstern, M., Mageiros, L., Hitchings, MD., Méric, G., Pascoe, B., Sheppard, SK., Richards, GR. & Moriarty, TF. (2017)
A comparative genomics study of Staphylococcus epidermidis from orthopedic device-related infections correlated with patient outcome
Journal of Clinical Microbiology 55 (10): 3089-3103; (doi:10.1128/JCM.00881-17)
Pascoe, B.; Méric, G., Yahara, K., Wimalarathna, H., Murray, S., Hitchings, MD., Sproston, EL., Carrillo, CD., Taboada, EN., Cooper, KK., Huynh, S., Cody, A., Jolley, KA., Maiden, MCJ., McCarthy, N., Didelot, X., Parker, CT. and Sheppard, SK. (2017)
Local genes for local bacteria: evidence of allopatry in the genomes of transatlantic Campylobacter populations
Molecular Ecology 26 (17): 4497-4508; DOI: 10.1111/mec.14176 [PeerJ preprint doi: 10.7287/peerj.preprints.2638v1]
Thépault, A., Méric, G., Rivoal, K., Pascoe, B., Mageiros, L., Touzain, F., Rose, V., Béven, V., Chemaly, M., Sheppard, SK. (2017)
Genome-wide identification of host-segregating epidemiological markers for source attribution in Campylobacter jejuni
Applied Environmental Microbiology 83 (7): e03085-16; doi: 10.1128/AEM.03085-16
Murray, S.*; Pascoe, B.*; Méric, G., Mageiros, L., Yahara, K., Hitchings, MD., Friedmann, Y., Gormley, FJ; Wendlandt, S; Schwarz, S.; Lamble S, Bray JE, Bowden, R.; Jolley KA, Maiden, MCJ., Corander, J.; Fitzgerald, JR.; Sheppard, SK. (2017)
Recombination-mediated host-adaptation by avian Staphylococcus aureus.
Genome Biology & Evolution 9 (4): 830-842; DOI: 10.1093/gbe/evx037
Vale, FF., Nunes, A., Oleastro, M., Gomes, JP., Sampaio, D., Rocha, R., Vítor, J., Engstrand, L., Pascoe, B., Berthenet, E., Sheppard, SK., Hitchings, MD., Mégraud, F., Vadivelu, J., Lehours, P. (2017)
Genomic structure and insertion sites of Helicobacter pylori prophages from various geographical origins
Scientific Reports 7:42471; DOI: 10.1038/srep42471
Yahara, K., Méric, G., Taylor, AJ., de Vries, SPW., Murray, S., Pascoe, B., Mageiros, L., Torralbo, A., Vidal, A., Ridley, A., Komukai, S., Wimalarathna, H., Cody, AJ., Colles, FM., McCarthy, N., Harris, D., Bray, JE., Jolley, KA., Maiden, MCJ., Bentley, SD., Parkhill, J., Bayliss, CD., Grant, A., Maskell, D., Didelot, X., Kelly, DJ., Sheppard, SK. (2016)
Genome-wide association of functional traits linked with Campylobacter jejuni survival from farm to fork.
Environmental Microbiology 19(1):361-380; doi:10.1111/1462-2920.13628 [PeerJ preprint: doi.org/10.7287]
Yan, X., Li, Z., Chlebowicz, MA., Tao, X., Ni, M., Hu, Y., Li, Z., Grundmann, H., Murray, S., Pascoe, B., Sheppard, SK., Bo, X., van Dijl, JM., Du, P., Zhang, M., You, Y., Yu, X., Meng, F., Wang, S., and Zhang, J. (2016)
Livestock-associated Staphylococcus aureus ST9 isolates from Chinese pigs carry the lsa(E) gene and are quinupristin/ dalfopristin resistant
IJMM doi:10.1016/j.ijmm.2016.08.001
Culebro, A., Revez, J., Pascoe, B., Friedmann, Y., Hitchings, MD., Stupak, J., Sheppard, SK., Li, J., Rossi, M. (2016)
Genetic and chemical differentiation of Campylobacter coli and Campylobacter jejuni lipooligosaccharide pathways
JBact doi: 10.1128/JB.00347-16 [BioRxiv: dx.doi.org/10.1101/050328]
van Vliet, AHM; Pearson, BM; Williams, NJ; Pascoe, B, Méric, G; Ashton, P; Jenkins, C; Sheppard, SK; Crossman, LC; Wain J. (2016)
Generating tools for the molecular epidemiology of Campylobacter coli by next generation genome sequencing.
FSA Report October 2016
McNally, A., Oren, Y., Kelly, D., Pascoe, B., Dunn, S., Sreecharan, T., Vehkala, M., Välimäki, N., Prentice, M., Ashour, A.; Avram, O., Pupko, T., Dobrindt, U., Literak, I., Guenther, S., Schaufer, K., Wieler, L., Zhiyoung, Z., Sheppard, S.; McInerney, J., Corander, J. (2016)
Combined analysis of variation in core, accessory and regulatory genome regions provides a super-resolution view into the evolution of bacterial populations.
Plos Genetics 12 (9): e1006280 **Top 50 most downloaded PLoS Genetics papers 2016**
Sankar, A., Malone, B., Bayliss, S., Pascoe, B., Méric, G., Hitchings, MD., Sheppard, SK., Feil, EJ., Corander, J. & Honkela, A. (2016)
Bayesian identification of bacterial strains from sequencing data.
Microbial Genomics doi: 10.1099/mgen.0.000075 [arXiv:1511.06546]
Méric, G., Hitchings, MD., Pascoe, B. & Sheppard, SK. (2016)
From Escherich to the Escherichia coli genome: how a commensal bacterium shaped the history of modern microbiology.
Lancet Infectious Diseases 16 (6): 634-636
Harris, LG., Murray, S., Pascoe, B., Bray, JE., Méric, G., Mageiros, L., Wilkinson, TS., Jeeves, RE., Rohde, H., Schwarz, S., de Lancastre, H., Miragaia, M., Rolo, J., Bowden, R., Jolley, KA., Maiden, MCJ., Mack, D. & Sheppard, SK. (2016).
Biofilm morphotypes and population structure among Staphylococcus epidermidis from commensal and clinical samples.
PLoS ONE 11(3): e0151240
Dearlove B, Cody A, Pascoe B, Méric G, Wilson D, Sheppard SK (2016)
Rapid host switching in generalist Campylobacter strains erodes the signal for tracing human infections.
The ISME Journal 10 (3): 721-9 [arXiv:1504.01607]
Jackson, E., Ogrodzki, P., Pascoe, B., Sheppard, SK. & Forsythe, S. (2016)
Draft Genome Sequence of an Enterobacter Species Associated with Illnesses and Powdered Infant Formula.
Genome Announcement 4(1): e01479-15
Pascoe B, Méric G, Murray S, Yahara K, Magerios L, Bowen R, Jones NH, Jeeves RE, Lappin-Scott HM, Asakura H, Sheppard SK (2015)
Enhanced biofilm formation and multi-host transmission evolve from divergent genetic backgrounds in Campylobacter jejuni.
Environmental Microbiology 17:(11) 4779–4789
Richards RL, Haigh RD, Pascoe B, Sheppard SK, Price F, Jenkins D, Rajakumar K, Morrissey JA. (2015)
Persistent Staphylococcus aureus isolates from two independent bacteraemia display increased bacterial fitness and novel immune evasion phenotypes.
Infection and Immunity 83 (8): 3311-24
Méric G, Miragaia M, de Been M, Yahara K, Pascoe B, Mageiros L, Mikhail J, Harris LG, Wilkinson TS, Rolo J, Lamble S, Bray JE, Jolley KA, Hanage WP, Bowden R, Maiden MCJ, Mack D, de Lencastre H, Feil EJ, Corander J, Sheppard SK (2015)
Ecological overlap and horizontal gene transfer in Staphylococcus aureus and Staphylococcus epidermidis.
Genome Biology and Evolution 7 (5): 1313-28
Baily JL, Méric G, Bayliss S, Foster G, Moss SE, Watson E, Pascoe B, Mikhail J, Pizzi R, Goldstone RJ, Smith DG, Willoughby K, Hall AJ, Sheppard SK*, Dagleish MP* (2015)
Evidence of land-sea transfer of the zoonotic pathogen Campylobacter to a wildlife marine sentinel species.
Molecular Ecology 24 (1): 208-21
Méric G, Yahara K, Mageiros L, Pascoe B, Maiden MCJ, Jolley KA, Sheppard SK (2014)
A Reference Pan-Genome Approach to Comparative Bacterial Genomics: Identification of Novel Epidemiological Markers in Pathogenic Campylobacter.
PLoS ONE 9(3): e92798
Pascoe, B; Dams, L; Wilkinson, TS; Harris, LG; Bodger, O; Mack, D; Davies, AP. (2014)
Dormant cells of Staphylococcus aureus are resuscitated by spent culture supernatant.
PLoS One 9 (2): e85998
Sheppard, SK; Didelot, X; Jolley, KA; Darling, AE; Pascoe, B; Méric, G; Kelly, DJ; Cody, A; Colles, FM; Strachan, NJC; Ogden, ID; Forbes, K; French, NP; Carter, P; Miller, WG; McCarthy, ND; Owen, R; Litrup, E; Egholm, M; Affourtit, JP; Bentley, SD; Parkhill, J; Maiden, MCJ & Falush, D (2012)
Progressive genome-wide introgression in agricultural Campylobacter coli
Molecular Ecology. 2013 22 (4):1051-64
Mack, D.; Harris, LG.; Jeeves, RE.; Pascoe, B.; Davies, AP.; Wilkinson, TS. (2011)
Mechanisms of Staphylococcus epidermidis biofilm formation in different types of biomaterial-related infections.
European Cells & Materials 21 (S2) 21-22
Kallifidas, D*; Pascoe, B*; Owen, GA; Strain, CM; Hong, HG & Paget, MSB (2010)
The Zinc-responsive Regulator Zur Controls Expression of the Coelibactin Gene Cluster in Streptomyces coelicolor.
J Bact 192: (2) 608-611
Owen, GA*; Pascoe, B*; Kallifidas, D & Paget, MSB. (2007)
Zinc-responsive regulation of alternative ribosomal protein genes in Streptomyces coelicolor involves Zur and σR.
J Bact 189: (11) 4078-4086
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