Pascoe LabUniversity of Oxford · Ineos Oxford Institute

Pathogen genomics · evolution · One Health

Pathogen genomics across One Health systems.

We use population genomics, epidemiology and AI to study transmission, antimicrobial resistance and disease across people, animals and environments.

Research themes Flagship projects

University of Oxford · Ineos Oxford Institute for Antimicrobial Research

Scientific illustration of a bacterium with ecological and floral motifs
Transmission · adaptation · prediction
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Research themes

Four linked questions.

Transmission

How do bacteria spread within and between environments, animals and humans?

Evolution

How do bacteria evolve and adapt to new hosts?

Open tools

Can we build open and accessible tools to study bacterial genomes?

Prediction

Can genomics and AI help predict disease outcomes?

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Flagship projects

Four collaborative programmes.

People & supervision

Researchers and opportunities.

Meet the current doctoral researchers and learn how projects are supervised.

Meet the team

Open resources

Protocols, code and data.

Reusable laboratory procedures, genomic workflows and project infrastructure.

Browse resources